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Correct CNF and MAF According to Purity

Usage

CorrectPurity(chromosome, cov_segmentmean, MAF_observe, gender, purity)

Arguments

chromosome

Character. Chromosome name.

cov_segmentmean

Numeric. Segment mean (log2 ratio).

MAF_observe

Numeric. Observed minor allele frequency.

gender

Character. "male" or "female".

purity

Numeric. Tumor purity (fraction between 0 and 1).

Value

A list with CNF_correct and MAF_correct.