Filters smoothed coverage bins to include only those overlapping whitelisted regions.
Usage
KeepWhitelistCov(smooth_cov, whitelist, gender)
Arguments
- smooth_cov
Data frame or tibble. Smoothed coverage data, must include columns CONTIG, bin_start, and bin_end.
- whitelist
Data frame or tibble. Whitelist regions, must include columns chrom, start, and end.
- gender
Character. femle or male.
Value
A data frame of smoothed coverage bins that overlap whitelisted regions.
Examples
# KeepWhitelistCov(smooth_cov, whitelist)
