Refines values and calls for each segment based on the selected (mu, rho) model, adjusting segment mean, purity, and copy number calls.
Usage
RefineCalls(df, max_L_mu, max_L_rho, gender)
Arguments
- df
Data frame or tibble. Segment call data, must include columns used in refinement.
- max_L_mu
Numeric. The selected value of mutation multiplicity (mu).
- max_L_rho
Numeric. The selected value of tumor purity (rho).
- gender
Character. Gender female or male.
Value
A data frame or tibble with refined segment calls, ordered by chromosome and start position.
Examples
# RefineCalls(df, max_L_mu = 1, max_L_rho = 0.7, gender = "female")
