Merge Segments or AI Rows by Chromosome

This function splits the input data by chromosome and merges segments or AI rows within each chromosome using either MergeAIRow or MergeSegRow.

Usage

CallMerge(data, AIorSeg, tmp_maf, snpmin, mergeai, mergecov)

data: A data frame or tibble containing segment or AI information. Must include a Chromosome column.
AIorSeg: Character string, either "AI" to merge AI rows or "Seg" to merge segments.
tmp_maf: A data frame for use with MergeAIRow. Not used if AIorSeg == "Seg".
snpmin: Numeric. Minimum SNP count required for a segment to be considered as a separate segment.
mergeai: Numeric. Threshold for the difference in MAF (gmm_mean) between adjacent segments to allow merging.
merge_cov: Numeric. Threshold for the difference in segment mean (gmm_mean) between adjacent segments to allow merging.

A data frame or tibble with merged segments or AI rows for each chromosome.

Uses MergeAIRow if AIorSeg == "AI", otherwise MergeSegRow.